Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

SRX2202653: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.2M spots, 361.1M bases, 233.9Mb downloads

External Id: EXT00218548

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)

Study: GenomeTrakr Project: United Kingdom, Food and Environment Research Agency

PRJNA259925 • SRP048657 • All experiments • All runs

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Whole genome sequencing of cultured Salmonella as part of a joint Fera, Food Standards Agency, US Food and Drug Administration project.

Sample:

SAMN03218342 • SRS1721193 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar 4,12:d:-

Library:

Name: Salmonella enterica subsp. enterica Nextera XT shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.8.5
demultiplexer	1	0	MiSeq Reporter	2.3

Runs: 1 run, 1.2M spots, 361.1M bases, 233.9Mb

Run	# of Spots	# of Bases	Size	Published
SRR4319123	1,164,425	361.1M	233.9Mb	2016-09-30

ID:: 3236032

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